API Reference

Genome

Genome Visualisation

• tnt.board.genome : creates a new genome board
• genome.species : sets the species for the genome board
• genome.chr : sets the chromosome for the visualisation
• genome.gene : sets the gene to show in the genome visualisation
• genome.min_coord : sets the minimum allowed genome coordinate in the visualitation
• genome.max_coord : sets the maximum allowed genome coordinate in the visualisation
• genome.expand : sets extra space in the visualisation

Display

• tnt.board.track.feature.genome.gene : creates a new gene display
• tnt.board.track.feature.genome.transcript : creates a new transcript display
• tnt.board.track.feature.genome.sequence : creates a new sequence display

Data

• tnt.board.track.data.genome.gene : creates a new gene retriever
• tnt.board.track.data.genome.transcript : creates a new transcript retriever
• tnt.board.track.data.sequence.sequence : creates a new sequence retriever
• sequence.limit : sets a limit for returning the genomic sequence

Layout

• display.layout : sets a layout for the elements of a track
• tnt.board.track.layout.genome : default layout for genes and transcripts
• genome.fixed_slot_type : specifies if the layout should always keep the slot type
• genome.keep_slots : specifies if the elements should keep vertical positions between updates
• genome.on_layout_run : sets a callback to be run after the layout has finished positioning elements